PHP Deprecated:  Function mcrypt_generic_init() is deprecated in /home/matsui/portal.kumolabo.com-dev2/vendor/phpseclib/phpseclib/phpseclib/Crypt/Base.php on line 1132
PHP Deprecated:  Function mcrypt_generic_init() is deprecated in /home/matsui/portal.kumolabo.com-dev2/vendor/phpseclib/phpseclib/phpseclib/Crypt/Base.php on line 792
PHP Deprecated:  Function mcrypt_generic() is deprecated in /home/matsui/portal.kumolabo.com-dev2/vendor/phpseclib/phpseclib/phpseclib/Crypt/Base.php on line 852
PHP Deprecated:  Function mcrypt_list_algorithms() is deprecated in /home/matsui/portal.kumolabo.com-dev2/vendor/phpseclib/phpseclib/phpseclib/Crypt/Base.php on line 1659
PHP Deprecated:  Function mcrypt_module_open() is deprecated in /home/matsui/portal.kumolabo.com-dev2/vendor/phpseclib/phpseclib/phpseclib/Crypt/Base.php on line 1859
PHP Deprecated:  Function mcrypt_module_open() is deprecated in /home/matsui/portal.kumolabo.com-dev2/vendor/phpseclib/phpseclib/phpseclib/Crypt/Base.php on line 1860
PHP Deprecated:  Function mdecrypt_generic() is deprecated in /home/matsui/portal.kumolabo.com-dev2/vendor/phpseclib/phpseclib/phpseclib/Crypt/Base.php on line 1174

php-mcryptが入っていると、チェックする段階でdepricatedエラーが出てしまうみたい。
php-mcryptを削除してやると出なくなった。

# yum remove php-mcrypt

# service httpd reload